PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G206500.1
Common NamePHAVU_009G206500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 347aa    MW: 39530.5 Da    PI: 7.1008
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G206500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.4e-1245101155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Phvul.009G206500.1  45 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 101
                         57*******************99998898888888********************98 PP

2AP251.32.9e-16144195155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Phvul.009G206500.1 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 195
                         89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-1545111IPR016177DNA-binding domain
PfamPF008472.4E-845101IPR001471AP2/ERF domain
PROSITE profilePS5103218.82146109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-1346110IPR001471AP2/ERF domain
SMARTSM003802.0E-2046115IPR001471AP2/ERF domain
PRINTSPR003673.8E-64758IPR001471AP2/ERF domain
CDDcd000181.22E-23144205No hitNo description
SuperFamilySSF541719.81E-18144205IPR016177DNA-binding domain
PfamPF008475.3E-12144195IPR001471AP2/ERF domain
PROSITE profilePS5103218.334145203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17145204IPR001471AP2/ERF domain
SMARTSM003801.2E-24145209IPR001471AP2/ERF domain
PRINTSPR003673.8E-6185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGKHQRHNKT NASTNTNLNA TNTVPTKVKR TRRSVPRDSP PQRSSIYRGV TRHRWTGRYE  60
AHLWDKNCWN ESQNKKGRQG AYDDEEAAAH AYDLAALKYW GQDTILNFPL STYQNEVKEM  120
ECQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE  180
EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LKPNNNDNTV NSNILHANPN PNSETNSTPS  240
SNEQQGFNFF QSQESTMAQP RPSGATSALG LLLQSSKFKE MMEMTSAADL STERSESELL  300
PCTFPDDIQT YFECEDSNIY GEGAENMFSE LNSFVPHMFH CDEFET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-170AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138410.10.0hypothetical protein PHAVU_009G206500g
SwissprotQ94AN41e-109AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLV7AXV20.0V7AXV2_PHAVU; Uncharacterized protein
STRINGGLYMA04G24010.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.16e-96ARIA-interacting double AP2 domain protein